Given once, 2018

Structural Parameter­izations for Colorful Components

Cut a colored graph into pieces where no color repeats, with genomics in mind

Parameterized algorithms · Kernelization · Graph algorithms

An advanced research talk, for graduate students and up.

Abstract

Draft, not yet checked by me

In comparative genomics, genes across several genomes form a vertex-colored graph (one color per genome), and groups of orthologous genes should be colorful, with no color appearing twice. The Colorful Components problems delete edges so that every component ends up colorful, either deleting as few edges as possible (Colorful Components) or keeping as many edges as possible in the transitive closure (MEC). I improve known parameterized results for both. For MEC, I give a randomized kO(k) algorithm based on color coding and a linear kernel on trees. For Colorful Components, which is para-NP-hard even with a deletion set to disjoint stars, I give an FPT algorithm parameterized by vertex cover.

The slides

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